Drábek Jiří Ph.D.

Journals

ZHAO, Y., L. FANG, T. SHEN, S. CHOUDHARI, K. TALSANIA, X. CHEN, J. SHETTY, Y. KRIGA, B. TRAN, B. ZHU, Z. CHEN, W. CHEN, C. WANG, E. JAEGER, D. MEERZAMAN, C. LU, K. IDLER, L. REN, Y. ZHENG, L. SHI, V. PETITJEAN, M. SULTAN, T. HUNG, E. PETERS, J. DRÁBEK, P. VOJTA, R. MAESTRO, D. GASPAROTTO, S. KOKS, E. REIMANN, A. SCHERER, J. NORDLUND, U. LIJEDAHL, J. FOOX, C. MASON, C. XIAO, H. HONG, W. XIAO
Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study. Scientific Data. 2021, 8(1), 296, ISSN: 2052-4463, PMID: 34753956,
FANG, L., B. ZHU, Y. ZHAO, W. CHEN, Z. YANG, L. KERRIGAN, K. LANGEBACH, M. DE MARS, K. IDLER, H. JACOB, Y. ZHENG, Y. YU, E. JAEGER, G. SCHROTH, O. ABAAN, K. TALSANIA, J. LACK, T. SHEN, S. STANBOULY, B. TRAN, J. SHETTY, Y. KRIGA, D. MEERZAMAN, C. NGUYEN, V. PETITJEAN, M. SULTAN, M. CAM, M. MEHTA, T. HUNG, E. PETERS, R. KALAMEGHAM, S. SAHRAEIAN, M. MOHIYUDDI, T. GUO, L. YAO, L. SONG, H. LAM, J. DRÁBEK, P. VOJTA, R. MAESTRO, D. GASPAROTTO, S. KOKS, E. REIMANN, A. SCHERER, J. NORDLUND, U. LILJEDAHL, R. JENSEN, M. PIROOZNIA, Z. LI, C. XIAO, S. SHERRY, R. KUSKO, M. MOOS, E. DONALDSON, Z. TEZAK, B. NING, W. TONG, J. LI, P. DUERKEN-HUGHES, C. CATALANOTTI, S. MAHESHWARI, J. SHUGA, W. LIANG, J. KEATS, J. ADKINS, E. TASSONE, V. ZISMANN, T. MCDANIEL, J. TRENT, J. FOOX, D. BUTLER, C. MASON, H. HONG, C. WANG, W. XIAO, I. SOMATIC
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing. Nature Biotechnology. 2021, 39(9), 1151-60, ISSN: 1087-0156, PMID: 34504347,
XIAO, W., L. FANG, Y. ZHAO, J. LACK, M. GUAN, B. ZHU, E. JAEGER, L. KERRIGAN, T. BLOMQUIST, T. HUNG, M. SULTAN, K. IDLER, A. SCHERER, R. KUSKO, M. MOOS, C. XIAO, S. SHERRY, O. ABAAN, W. CHEN, X. CHEN, J. NORDLUND, U. LILJEDAHL, R. MAESTRO, M. POLANO, J. DRÁBEK, P. VOJTA, S. KOKS, E. REIMANN, B. MADALA, T. MERCER, C. MILLER, H. JACOB, T. TRUONG, A. MOSHREFI, A. NATARAJAN, A. GRANAT, G. SCHROTH, R. KALAMEGHAM, E. PETERS, V. PETITJEAN, A. WALTON, T. SHEN, K. TALSANIA, C. VERA, K. LANGEBACH, M. DE MARS, J. HIPP, J. WILLEY, J. WANG, J. SHETTY, Y. KRIGA, A. RAZIUDDIN, B. TRAN, Y. ZHENG, Y. YU, M. CAM, P. JAILWALA, C. NGUYEN, D. MEERZAMAN, Q. CHEN, B. ERNEST, U. MEHRA, R. JENSEN, W. JONES, J. LI, B. PAPAS, M. PIROOZNIA, Y. CHEN, F. SEIFUDDIN, Z. LI, X. LIU, W. RESCH, J. WANG, L. WU, G. YAVAS, C. MILES, B. NING, W. TONG, C. MASON, E. DONALDSON, S. LABABIDI, L. STAUDT, Z. TEZAK, H. HONG, C. WANG
Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing. Nature Biotechnology. 2021, 39(9), 1141-50, ISSN: 1087-0156, PMID: 34504346,

Books & book chapters

DRÁBEK, J.
Design primerů pro polymerázovou řetězovou reakci (PCR), 1.vyd, Olomouc, Univerzita Palackeho v Olomouci, 2012, 5, 45-56, Dedication: CZ.1.07/2.3.00/09.0089, ISBN: 978-80-244-3199-4,
HAJDÚCH, M., J. DRÁBEK, R. TROJANEC
Biologická léčiva: Teoretické základy a klinická praxe, 1. vyd, Praha, Grada Publishing, 2012, 219 s, Dedication: BIOMEDREG CZ.1.05/2.1.00/01.0030, ISBN: 978-80-247-3727-0,
DRÁBEK, J., J. BERKOVCOVÁ, P. DŽUBÁK, M. HAJDÚCH, M. KHOYLOU, V. KOUDELÁKOVÁ, J. SROVNAL, M. STAŇKOVÁ, R. TROJANEC
Detekce nádorových biomarkerů v molekulárně biologické laboratoři, 1. vyd, Olomouc, Univerzita Palackého v Olomouci, 2012, 144 s, Dedication: MOLONKOL CZ.1.07/2.3.00/09.0089, ISBN: 978-80-244-3002-7,

Doctoral mentorship

Tzu-Hsuan Cheng

Cell line authentication using PCR High Resolution Melting Analysis

Stav: Probíhající od 2016 do 2016.
Kotková Lucie

Genetic and Epigenetic Biomarkers in cancer

Stav: Probíhající od 2017.

Master mentorship

Hrušková Eva B.Sc.

Testing the temperature uniformity of the thermocyclers using melting temperature of the same amplicon

Stav: Absolvoval od 2010 do 2015.
Vaňková Veronika

Optimization of mycoplasma detection system based on Recombinase polymerase amplification (RPA)

Stav: Absolvoval od 2018 do 2020.
Crlíková Hana

Stabilisation of PCR reagents for storing at room temperature

Stav: Absolvoval od 2015 do 2016.

Bachelor mentorship

Svobodová Vendula

Hereditary cancer syndromes and their molecular genetics detection

Stav: Absolvoval od 2013 do 2014.
Kadličková Dominika

DNA profiling by high resolution melting of microsatellite amplicons

Stav: Absolvoval od 2015 do 2017.
Bebčáková Ema

Authentication of CFTR transgenic mice by PCR

Stav: Probíhající od 2023.

Open positions

Projekt: Genetic and epigenetic biomarkers of cancer diseases
Vedoucí: Slavkovský Rastislav Ph.D., Džubák Petr M.D., Ph.D., Hajdúch Marián M.D., Ph.D., Drábek Jiří Ph.D.
K dispozici: 3
Určeno pro: Doktorské studium
Souhrn: 3 places in full-time or combined form of study
Projekt: Epigenetic and genetic biomarkers of phenotypic traits
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Doktorské studium
Souhrn: 1 place in full-time study
Projekt: Genetic and epigenetic biomarkers in health and disease
Vedoucí: Slavkovský Rastislav Ph.D., Džubák Petr M.D., Ph.D., Hajdúch Marián M.D., Ph.D., Drábek Jiří Ph.D., Koudeláková Vladimíra Ph.D.
K dispozici: 5
Určeno pro: Doktorské studium
Projekt: Bioinformatic sequence extraction of short tandem repeats from whole-genome sequencing data for sample re-identification
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Bakalářské studium
Souhrn: -
Projekt: Bioinformatic sequence extraction of short tandem (microsatellite) repetitions from whole-genome sequencing data for sample re-identification
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Bakalářské studium
Souhrn: -
Projekt: Bioinformatic determination of a related grapevine grown by Gregor Mendel based on data from microsatellite repeat genotyping and comparison with available databases
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Bakalářské studium
Souhrn: -
Projekt: Software for calculation of the strength of genetic evidence for paternity of hydatidiform moles
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Bakalářské studium
Souhrn: -
Projekt: Bioinformatic differentiation of cytosine methylation in individual subfamilies of Alu repeats after bisulfitation reaction and massively parallel sequencing
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Bakalářské studium
Souhrn: -
Projekt: Epigenetic biomarkers
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Magisterské studium
Souhrn: -
Projekt: Genetic biomarkers
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Magisterské studium
Souhrn: -
Projekt: Bioinformatic differentiation of individual subfamilies of Alu repetitions after bisulfitation reaction and massively parallel sequencing
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Bakalářské studium
Souhrn: -
Projekt: Bioinformatic determination of kinship of grapevine grown by Gregor Mendel based on data from microsatellite DNA profiling compared with available databases
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Bakalářské studium
Souhrn: -
Projekt: Programmed software for calculating the likelihood ratio (strength of genetic evidence) in determining the paternity of hydatidiform moles
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Bakalářské studium
Souhrn: -
Projekt: Genetic biomarkers
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Magisterské studium
Projekt: Epigenetic biomarkers
Vedoucí: Drábek Jiří Ph.D.
K dispozici: 1
Určeno pro: Magisterské studium