Laboratory of Experimental Medicine

Group name

Translational disease models and neurodegeneration

Junior research group

The focus of our research can be broadly categorised into two areas. (1) A better understanding of the aetiology of ageing-associated neurodegenerative disorders to develop therapies. In particular, we are interested in misfolding, aggregation and prion-like spreading of tau in Alzheimer's disease and α-synuclein in Parkinson's disease and ways to target them. (2) The second area of our research focus is to develop physiologically relevant cellular models for disease modelling and drug discovery. This is a vital area of our research because the success of translating our basic research to the clinic relies critically on the ability of these models to mimic human diseases in the dish.

Drug discovery and repurposing | Proteinopathies | Prion-like spreading of protein in neurodegeneration | Three-dimensional cell culture systems | Organotypic slice cultures | Human iPSC-based disease modelling and drug discovery

  • Repurposing of anticancer drugs for ageing-associated neurodegenerative disorders
  • Specific pharmacological modulators of tau spreading for Alzheimer's disease preclinical studies
  • Identifying druggable targets conferring selective advantages to protein misfolding and aggregation – example of tau aggregation
  • Developing physiologically relevant cellular models – 3D cell cultures, organotypic slice cultures (brain and lungs) and human iPSCs.
ANNADURAI, N., L. MALINA, J. MALOHLAVA, M. HAJDÚCH a V. DAS. Tau R2 and R3 are essential regions for tau aggregation, seeding and propagation. Biochimie. 2022, 200, 79-86, ISSN 0300-9084, IF: 4.079, PMID: 35623497
ANNADURAI, N., L. MALINA, M. SALMONA, L. DIOMEDE, A. BASTONE, A. CAGNOTTO, M. ROMEO, M. SREJBER, K. BERKA, M. OTYEPKA, M. HAJDÚCH a V. DAS. Antitumour drugs targeting tau R3 VQIVYK and Cys322 prevent seeding of endogenous tau aggregates by exogenous seeds. FEBS Journal. 2021, 289(7), 1929-1949, ISSN 1742-464X, IF: 5.542, PMID: 34743390
ANNADURAI, N., J.B. DE SANCTIS, M. HAJDÚCH a V. DAS. Tau secretion and propagation: Perspectives for potential preventive interventions in Alzheimer's disease and other tauopathies. Experimental Neurology. 2021, 343, 113756, ISSN 0014-4886, IF: 5.330, PMID: 33989658
AGRAWAL, K., V. DAS, N. TÁBORSKÁ, J. GURSKÝ, P. DŽUBÁK a M. HAJDÚCH. Differential Regulation of Methylation-Regulating Enzymes by Senescent Stromal Cells Drives Colorectal Cancer Cell Response to DNA-Demethylating Epi-Drugs. Stem Cells International. 2018, 2018, 6013728, ISSN 1687-966X, IF: 3.989, PMID: 30158986
DAS, V., F. BRUZZESE, P. KONEČNÝ, F. IANNELLI, A. BUDILLON a M. HAJDÚCH. Pathophysiologically relevant in vitro tumor models for drug screening. Drug Discovery Today. 2015, 20(7), 848-55, ISSN 1359-6446, IF: 5.625, PMID: 25908576

Impact Factor Journals

ANNADURAI, N., J. HRUBÝ, A. KUBÍČKOVÁ, L. MALINA, M. HAJDÚCH a V. DAS. Time- and dose-dependent seeding tendency of exogenous tau R2 and R3 aggregates in cells. Biochemical and Biophysical Research Communications. 2023, 653, 102-105, ISSN 0006-291X, IF: 3.322, PMID: 36863211
HODOŇ, J., I. FRYDRYCH, Z. TRHLÍKOVÁ, J. POKORNÝ, L. BORKOVÁ, S. BENICKÁ, M. VLK, B. LIŠKOVÁ, A. KUBÍČKOVÁ, M. MEDVEDÍKOVÁ, M. PISÁR, J. ŠAREK, V. DAS, A. LIGASOVÁ, K. KOBERNA, P. DŽUBÁK, M. HAJDÚCH a M. URBAN. Triterpenoid pyrazines and pyridines - Synthesis, cytotoxicity, mechanism of action, preparation of prodrugs. European Journal of Medicinal Chemistry. 2022, 243, 114777, ISSN 0223-5234, IF: 7.088, PMID: 36174412
ANNADURAI, N., L. MALINA, J. MALOHLAVA, M. HAJDÚCH a V. DAS. Tau R2 and R3 are essential regions for tau aggregation, seeding and propagation. Biochimie. 2022, 200, 79-86, ISSN 0300-9084, IF: 4.079, PMID: 35623497
HRUBÁ, L., P. POLISHCHUK, V. DAS, M. HAJDÚCH a P. DŽUBÁK. An identification of MARK inhibitors using high throughput MALDI-TOF mass spectrometry. Biomedicine & Pharmacotherapy. 2022, 146, 112549, ISSN 0753-3322, IF: 6.530, PMID: 34923338
ANNADURAI, N., L. MALINA, M. SALMONA, L. DIOMEDE, A. BASTONE, A. CAGNOTTO, M. ROMEO, M. SREJBER, K. BERKA, M. OTYEPKA, M. HAJDÚCH a V. DAS. Antitumour drugs targeting tau R3 VQIVYK and Cys322 prevent seeding of endogenous tau aggregates by exogenous seeds. FEBS Journal. 2021, 289(7), 1929-1949, ISSN 1742-464X, IF: 5.542, PMID: 34743390
ANNADURAI, N., J.B. DE SANCTIS, M. HAJDÚCH a V. DAS. Tau secretion and propagation: Perspectives for potential preventive interventions in Alzheimer's disease and other tauopathies. Experimental Neurology. 2021, 343, 113756, ISSN 0014-4886, IF: 5.330, PMID: 33989658
KUGLER, M., J. NEKVINDA, J. HOLUB, S. EL ANWAR, V. DAS, V. SICHA, K.. POSPISILOVA, M. FABRY, V. KRAL, J. BRYNDA, V. KASICKA, M. HAJDÚCH, P. ŘEZÁČOVÁ a B. GRUNER. Inhibitors of CA IX Enzyme Based on Polyhedral Boron Compounds. Chembiochem : a European Journal of Chemical Biology. 2021, 22(18), 2741-2761, ISSN 1439-4227, IF: 3.164, PMID: 33939874
DAS, V. a J.B. DE SANCTIS. Small Natural and Synthetic Molecules for Therapeutic Use. Current Pharmaceutical Design. 2020, 26(35), 4349-4350, ISSN 1381-6128, IF: 2.208, PMID: 33081655
DVOŘANOVÁ ŠTĚPÁNKOVÁ, J., M. KUGLER, J. HOLUB, V. SICHA, V. DAS, J. NEKVINDA, S. EL ANWAR, M. HAVRANEK, K.. POSPISILOVA, M. FABRY, V. KRAL, M. MEDVEDÍKOVÁ, S. MATEJKOVA, B. LIŠKOVÁ, S. GURSKÁ, P. DŽUBÁK, J. BRYNDA, M. HAJDÚCH, B. GRUNER a P. ŘEZÁČOVÁ. Sulfonamido Carboranes as Highly Selective Inhibitors of Cancer-Specific Carbonic Anhydrase IX. European Journal of Medicinal Chemistry. 2020, 200, 112460, ISSN 0223-5234, IF: 5.572, PMID: 32505851
GRUNER, B., J. BRYNDA, V. DAS, V. SICHA, J. ŠTĚPÁNKOVÁ, J. NEKVINDA, J. HOLUB, K.. POSPISILOVA, M. FABRY, P. PACHL, V. KRAL, M. KUGLER, V. MAŠEK, M. MEDVEDÍKOVÁ, S. MATEJKOVA, A. NOVÁ, B. LIŠKOVÁ, S. GURSKÁ, P. DŽUBÁK, M. HAJDÚCH a P. ŘEZÁČOVÁ. Metallacarborane Sulfamides: Unconventional, Specific, and Highly Selective Inhibitors of Carbonic Anhydrase IX. Journal of Medicinal Chemistry. 2019, 62(21), 9560-9575, ISSN 0022-2623, IF: 6.054, PMID: 31568723
AGRAWAL, K., V. DAS, N. TÁBORSKÁ, J. GURSKÝ, P. DŽUBÁK a M. HAJDÚCH. Differential Regulation of Methylation-Regulating Enzymes by Senescent Stromal Cells Drives Colorectal Cancer Cell Response to DNA-Demethylating Epi-Drugs. Stem Cells International. 2018, 2018, 6013728, ISSN 1687-966X, IF: 3.989, PMID: 30158986
AGRAWAL, K., V. DAS, P. VYAS a M. HAJDÚCH. Nucleosidic DNA demethylating epigenetic drugs - A comprehensive review from discovery to clinic. Pharmacology & Therapeutics. 2018, 188, 45-79, ISSN 0163-7258, IF: 11.127, PMID: 29454856
ŘEHULKA, J., N. ANNADURAI, I. FRYDRYCH, P. DŽUBÁK, M. MILLER, M. HAJDÚCH a V. DAS. Peloruside A-Induced Cell Death in Hypoxia Is p53 Dependent in HCT116 Colorectal Cancer Cells. Journal of Natural Products. 2018, 81(3), 634-640, ISSN 0163-3864, IF: 3.281, PMID: 29400463
ANNADURAI, N., K. AGRAWAL, P. DŽUBÁK, M. HAJDÚCH a V. DAS. Microtubule affinity-regulating kinases are potential druggable targets for Alzheimer's disease. Cellular and Molecular Life Sciences. 2017, 74(22), 4159-4169, ISSN 1420-682X, IF: 5.788, PMID: 28634681
ŘEHULKA, J., N. ANNADURAI, I. FRYDRYCH, P. ZNOJEK, P. DŽUBÁK, P. NORTHCOTE, J.H. MILLER, M. HAJDÚCH a V. DAS. Cellular effects of the microtubule-targeting agent peloruside A in hypoxia-conditioned colorectal carcinoma cells. Biochimica et Biophysica Acta. 2017, 17, 30124-1, ISSN 0304-4165, IF: 5.083, PMID: 28366502
DAS, V., T. FÜRST, S. GURSKÁ, P. DŽUBÁK a M. HAJDÚCH. Evaporation-reducing Culture Condition Increases the Reproducibility of Multicellular Spheroid Formation in Microtiter Plates. Journal of Visualized Experiments. 2017, 121, doi: 10.3791/55403, ISSN 1940-087X, IF: 1.113, PMID: 28362402
AGRAWAL, K., V. DAS, M. OTMAR, M. KRECMEROVA, P. DŽUBÁK a M. HAJDÚCH. Cell-based DNA demethylation detection system for screening of epigenetic drugs in 2D, 3D, and xenograft models. Cytometry A. 2016, -, -, ISSN 1552-4922 , IF: 3.222, PMID: 27911980
DAS, V., T. FÜRST, S. GURSKÁ, P. DŽUBÁK a M. HAJDÚCH. Reproducibility of Uniform Spheroid Formation in 384-Well Plates: The Effect of Medium Evaporation. Journal of Biomolecular Screening. 2016, 21(9), 923-30, ISSN 1087-0571 , IF: 2.444, PMID: 27226477
DAS, V., F. BRUZZESE, P. KONEČNÝ, F. IANNELLI, A. BUDILLON a M. HAJDÚCH. Pathophysiologically relevant in vitro tumor models for drug screening. Drug Discovery Today. 2015, 20(7), 848-55, ISSN 1359-6446, IF: 5.625, PMID: 25908576
DAS, V., J. DVOŘANOVÁ ŠTĚPÁNKOVÁ, M. HAJDÚCH a J.H. MILLER. Role of tumor hypoxia in acquisition of resistance to microtubule-stabilizing drugs. Biochimica et Biophysica Acta Reviews on Cancer. 2015, 1855(2), 172-182, ISSN 0304-419X, IF: 7.841, PMID: 25662312
DAS, V., A. KANAKKANTHARA, A. CHAN a J.H. MILLER. Potential role of tubulin tyrosine ligase-like enzymes in tumorigenesis and cancer cell resistance. Cancer Letters. 2014, 350(1-2), 1-4, ISSN 0304-3835, IF: 5.621, PMID: 24814394
DAS, V., D.A. SIM a J.H. MILLER. Effect of taxoid and nontaxoid site microtubule-stabilizing agents on axonal transport of mitochondria in untransfected and ECFP-htau40-transfected rat cortical neurons in culture. Journal of Neuroscience Research. 2014, 92(9), 1155-1166, ISSN 0360-4012, IF: 2.594, PMID: 24788108
MUDSANI, G., K. PAIDIKONDALA, R. GUNDLA, S. MADDIRALA a V. DAS. Synthesis and Biological Evaluation of 5 '-Arylspiro[piperidine-4,3 '-pyrrolo-[2,3-b]pyridin] Analogues. Chemistryselect. 2021, 6(14), 3378-3381, ISSN 2365-6549, IF: 2.109,
MUDASANI, G., K. PAIDIKONDALA, S. GURSKÁ, S. MADDIRALA, P. DŽUBÁK, V. DAS a R. GUNDLA. C-5 Aryl Substituted Azaspirooxindolinones Derivatives: Synthesis and Biological Evaluation as Potential Inhibitors of Tec Family Kinases. European Journal of Organic Chemistry. 2022, 2021(33), 4630-4640, ISSN 1434-193X, IF: 3.021,
Project: A combination of 2D and 3D cell cultures for a smart and effective identification and characterization of anti-hypoxic candidates
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 1
Intended for: Doctoral training
Summary:

Hypoxia is a prominent feature of different solid tumor types. A central component of hypoxic adaptation is the stabilization of hypoxia-inducible factor-1 (HIF-1), a key transcriptional regulator of hypoxia that orchestrates the transcriptional regulation of genes involved in a plethora of cellular processes. Considering the multiple roles of HIF-1 in cancer, interest in novel small-molecule inhibitors of the HIF-1 pathway has steadily increased over the past 10 years. However, despite extensive research, no specific inhibitor of HIF-1 has been brought to the market, making the field still ripe for further exploration. The goal of the present work is to utilize the potential of a combination of 2D and 3D cellular models for identification and characterization of inhibitors of HIF-1 and/or HIF-1 pathway by screening in 2D cultures, and lightsheet microscopy and mass spectrometry studies in spheroid cultures.

Project: The role of tumor hypoxia in the development of acquired resistance to microtubule-targeted drugs
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 1
Intended for: Doctoral training
Summary:

1 place in full-time study

Project: An extensive structural and biochemical characterization of tau oligomeric species in Alzheimer’s disease and other tauopathies
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 1
Intended for: Doctoral training
Summary:

An extensive structural and biochemical characterization of tau oligomeric species in Alzheimer’s disease and other tauopathies

Project: The role of tumor hypoxia in the acquisition of resistance to microtubule-targeting drugs
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 1
Intended for: Doctoral training
Summary:

Hypoxia is one of the major factors causing resistance to microtubule-stabilizing drugs (MSDs) and other non-microtubule drugs used in chemotherapy. Hypoxia results in changes in tubulin conformation, expression of tubulin isotypes and metabolic pathways that make cancer cells less susceptible to paclitaxel, a taxane used extensively in the treatment of solid tumors. Recent cellular studies have shown that non-taxane MSDs with a similar mode of microtubule stabilization to paclitaxel is more effective in hypoxic cancer cells than paclitaxel. Due to a different microtubule-binding site, we hypothesize that non-taxane MSDs may have a better cytotoxic effect in cancer cells under hypoxia. The goal of this project is to study the anti-cancer effect of non-taxane MSDs in hypoxic ovarian and cervical cancer cell models.

Project: Drug synergy studies in 3D spheroids cultures of tumour cell lines
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 2
Intended for: Bachelor training, Master training
Project: Development of organoid assays for anti-tumour drug screening
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 2
Intended for: Bachelor training, Master training
Project: Biochemical and cellular analysis of amyloid staining agents in models of tauopathies and synucleopathies
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 2
Intended for: Bachelor training, Master training

Group Leader

Das Viswanath M.Sc., Ph.D.

Group members

Annadurai Narendran M.Sc.

Doctoral Student, Staff

Hrubý Jiří

Bachelor Student

Baslarová Kamila

Bachelor Student, Master Student

Herceg Samuel

Bachelor Student, Master Student

Kozlov Ihor

Master Student

Drlíková Kateřina

Bachelor Student

Pavlíková Martina

Master Student

Bechná Eliška

Master Student

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December 1–2, 2022 / Hotel NH Collection Olomouc Congress

Monday, September 5, 2022

Improving radiopharmaceuticals in their properties for better diagnosis and treatment